[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 99 items for (author: zhao & sw)

EMDB-29307:
Structure of WT HIV-1 intasome bound to Dolutegravir
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29309:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29312:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29313:
Structure of Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29315:
Structure of E138K/G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29317:
Structure of E138K/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29318:
Structure of G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29319:
Structure of E138K/G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29320:
Structure of E138K/G140A/Q148R HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29321:
Structure of E138K/G140S/Q148H HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-29322:
Structure of E138K/G140A/Q148K HIV-1 intasome with 4d bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fn7:
Structure of WT HIV-1 intasome bound to Dolutegravir
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnd:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fng:
Structure of E138K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnh:
Structure of Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnj:
Structure of E138K/G140A HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnl:
Structure of E138K/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnm:
Structure of G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnn:
Structure of E138K/G140A/Q148K HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fno:
Structure of E138K/G140A/Q148R HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnp:
Structure of E138K/G140S/Q148H HIV-1 intasome with Dolutegravir bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

PDB-8fnq:
Structure of E138K/G140A/Q148K HIV-1 intasome with 4d bound
Method: single particle / : Shan ZL, Passos DO, Strutzenberg TS, Li M, Lyumkis D

EMDB-15882:
Mp2Ba1 pre-pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

EMDB-15883:
Mpf2Ba1 pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

PDB-8b6v:
Mp2Ba1 pre-pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

PDB-8b6w:
Mpf2Ba1 pore
Method: single particle / : Marini G, Poland B, Leininger C, Lukoyanova N, Spielbauer D, Barry J, Altier D, Lum A, Scolaro E, Perez Ortega C, Yalpani N, Sandahl G, Mabry T, Klever J, Nowatzki T, Zhao JZ, Sethi A, Kassa A, Crane V, Lu A, Nelson ME, Eswar N, Topf M, Saibil HR

EMDB-33241:
Cryo-EM Structure of Human Niacin Receptor HCA2-Gi protein complex
Method: single particle / : Yang Y, Kang HJ, Gao RG, Wang JJ, Han GW, DiBerto JF, Wu LJ, Tong JH, Qu L, Wu YR, Pileski R, Li XM, Zhang XC, Zhao SW, Kenakin T, Wang Q, Stevens RC, Peng W, Roth BL, Rao ZH, Liu ZJ

EMDB-26467:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR04 (1 RBD up and 1 RDB down)
Method: single particle / : Torres JL, Ward AB

EMDB-26470:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (1 RBD up, 1 RBD down)
Method: single particle / : Torres JL, Ward AB

EMDB-26472:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (1 RBD up)
Method: single particle / : Torres JL, Ward AB

EMDB-26473:
SARS-CoV-2 6P Mut7 in complex with Fab THSC20.HVTR26 (3 RBD down)
Method: single particle / : Torres JL, Ward AB

EMDB-25921:
CryoET of presequence protease single particle
Method: electron tomography / : Noble AJ, Liang W, Tang WJ

EMDB-22278:
CryoEM structure of human presequence protease in partial open state 1
Method: single particle / : Liang WG, Zhao M

EMDB-22279:
CryoEM structure of human presequence protease in partial open state 2
Method: single particle / : Liang WG, Zhao M

EMDB-22280:
CryoEM structure of human presequence protease in open state
Method: single particle / : Liang WG, Zhao M

EMDB-22281:
CryoEM structure of human presequence protease in partial closed state 1
Method: single particle / : Liang WG, Zhao M

PDB-6xos:
CryoEM structure of human presequence protease in partial open state 1
Method: single particle / : Liang WG, Zhao M, Tang W

PDB-6xot:
CryoEM structure of human presequence protease in partial open state 2
Method: single particle / : Liang WG, Zhao M, Tang W

PDB-6xou:
CryoEM structure of human presequence protease in open state
Method: single particle / : Liang WG, Zhao M, Tang W

PDB-6xov:
CryoEM structure of human presequence protease in partial closed state 1
Method: single particle / : Liang WG, Zhao M, Tang W

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-30781:
The cryo-EM structure of human papillomavirus type 58 pseudovirus
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Li SW, Xia NS

EMDB-30768:
2-fold subparticles refinement of human papillomavirus type 58 pseudovirus
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Gu Y, Li SW, Xia NS

EMDB-30769:
3-fold sub-particles refinement of human papillomavirus type 58 pseudovirus
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Gu Y, Li SW, Xia NS

EMDB-30770:
5-fold sub-particles refinement of human papillomavirus type 58 pseudovirus
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Gu Y, Li SW, Xia NS

EMDB-30772:
The cryo-EM structure of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of 5G9
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Gu Y, Li SW, Xia NS

EMDB-30773:
The cryo-EM structure of human papillomavirus type 58 pseudovirus in complexed with the Fab fragment of 10B11
Method: single particle / : He MZ, Chi X, Zha ZH, Zheng QB, Gu Y, Li SW, Xia NS

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more